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Br J Ophthalmol 92:281-285 doi:10.1136/bjo.2007.127035
  • Original Article
    • Laboratory science

Methylation of CpG island promoters in uveal melanoma

Table 3 Oligoprobe sequences and conditions for methylation-sensitive dot-blot assay
Gene CG-probe sequences (5′–3′) TG-probe sequences (5′–3′) Tm Hyb(°C) Tm washes(°C)
p16 TCGGAGGGGGTTTTTTCGTT GTTGGAGGGGGTTTTTTTGTT 50 53
TIMP3 GTCGATGAGGTAATGCGGTT GGTTGATGAGGTAATGTGGTT 50 52
RASSF1 CAAAACCAACGAAACACGAAC CAAAACCAACAAAACACAAACC 50 53
RARB GGAAAGAAAACGTCGGTTTGT GGAAAGAAAATGTTGGTTTGTG 50 53
hTERT TAGTTGCGTTGTCGGGGTTA GTAGTTGTGTTGTTGGGGTTA 50 53
FHIT GGTTTCGTTTTTATCGTGGG GGGTTTTGTTTTTATTGTGGG 48 52.5
APC GATGCGGATTAGGGCGTTTT GGATGTGGATTAGGGTGTTTT 50 53

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