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BAP1 germline mutation in two first grade family members with uveal melanoma
  1. David A Maerker1,
  2. Michael Zeschnigk2,
  3. Jasmin Nelles2,
  4. Dietmar R Lohmann2,
  5. Karl Worm3,
  6. Anja K Bosserhoff4,
  7. Rosemarie Krupar4,
  8. Herbert Jägle1
  1. 1Department of Ophthalmology, University of Regensburg, Germany
  2. 2Eye Cancer Research Group, Faculty of Medicine, Institute for Human Genetics,University of Duisburg Essen, Essen, Germany
  3. 3Faculty of Medicine, Institute for Pathology and Neuropathology, University of Duisburg Essen, Essen, Germany
  4. 4Institute of Pathology, University of Regensburg, Regensburg, Germany
  1. Correspondence to Dr David Arthur Maerker, Department of Ophthalmology, University of Regensburg, Franz-Josef-Strauss-Allee 11, Regensburg 93042, Germany; maerker{at}eye-regensburg.de

Abstract

Background Uveal melanoma (UM) is the most common primary cancer of the eye in adults. About half of the patients are at risk of developing metastatic disease resulting in a poor clinical prognosis. Metastatic progression is strongly associated with loss of one chromosome 3 in the tumour (monosomy 3). The tumour suppressor gene BAP1 was found to be recurrently mutated in UM with monosomy 3. Familial UM is rare and amounts to about 0.6–6% of all patients with melanoma. However, BAP1 germline mutations have been identified in rare hereditary tumour syndromes, including cases with UM. One may assume that UM may be part of these hereditary conditions with predisposition to malignant cancers.

Methods The patients underwent complete ophthalmological workup and enucleation due to UM. Microsatellite analysis was performed to determine the chromosome 3 status of the tumours. Sanger sequencing of all coding exons of the BAP1 gene was performed in blood DNA of the patients.

Results Here we report on two family members (mother and son) diagnosed with UM. In both patients, a cosegregating BAP1 germline mutation (c.299 T>C) was found. The mutant BAP1 allele was retained in the tumour of the son showing monosomy 3. The son further developed urothelial carcinoma and liver metastasis, the mother was affected by the UM and cholangiocellular carcinoma.

Conculsions We detected a cosegregating BAP1 germline mutation in two family members with UM. This suggests that, consistent with a classic tumour suppressor model, carriers of damaging mutations in BAP1 are predisposed to UM. However, as BAP1 germline mutations have been found to cause other cancer syndromes as well, there must be other factors that decide about the type of tumour emerging from BAP1 inactivation.

  • Choroid
  • Ciliary body
  • Genetics
  • Neoplasia
  • Retina
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Introduction

Uveal melanoma (UM) is the second most common form of melanoma and the most common primary cancer of the eye in adults and has a strong propensity for fatal metastasis.1 The exact aetiology of this cancer remains unclear. UM can arise anywhere in the uveal tract including ciliary body and choroid. Frequently, more than one of these structures are involved. UM is usually sporadic and the average age at diagnosis of primary tumour is in the mid-50s. However, there are rare cases of familial UM, comprising only ∼0.6–6% of all patients with UM.2 ,3 There are 73 such cases documented in the literature, including the family in this report.4–6

Loss of one chromosome 3 (monosomy 3) in the tumour is strongly associated with metastatic death of patients suggesting that inactivating mutations of a gene on the remaining chromosome 3 promotes metastasis.7

BAP1, which maps to 3p21, codes for an ubiquitin carboxy-terminal hydrolase that interacts with the Really Interesting New Gene (RING) finger domain of the breast cancer 1 early onset protein (BRCA1).8 ,9 This gene is thought to be a tumour suppressor gene that functions in the BRCA1 growth control pathway.8 ,10 In BRCA1 mutation carriers, multiple neoplasms and family history of breast cancer occur frequently. A higher frequency of UM in BRCA germline mutation carriers than predicted has been reported recently.11

Lately, Harbour et al12 reported BAP1 inactivating mutations which were predominantly found in UMs with high metastatic potential. BAP1 germline truncating mutation predispose to a hereditary cancer syndrome including UM, lung adenocarcinoma, neuroendocrine carcinoma, meningioma, cutaneous melanoma and possibly other cancers.13 Additionally, Wiesner et al14 described an autosomal dominant syndrome that is caused by germline mutations of BAP1, characterised by a high penetrance of melanocytic neoplasms possibly associated with an increased risk for uveal and cutaneous melanomas. Here we report a germline BAP1 mutation cosegregating with UM in two affected first degree family members.

Methods

Patients

Informed consent of the patients was obtained; the study was in adherence to the tenets of the Declaration of Helsinki. Mother and son underwent complete ophthalmological workup including slit lamp examination, funduscopy, gonioscopy, a-scan and b-scan ultrasound, and as far as needed fluorescein angiography. The primary tumours of both patients were treated by enucleation. Histopathological analysis was performed.

Genetic analyses

The son's tumour DNA was isolated from fresh frozen tumour as described elsewhere.15 DNA from the mother's tumour was prepared from formalin fixed paraffin embedded tumour tissue using the QIAamp DNA Mini Kit (Qiagen, Hilden, Germany) following the protocol: ‘Isolation of genomic DNA from paraffin-embedded tissue’.

Chromosome 3 typing was performed by microsatellite analysis using eight chromosome 3 markers as described elsewhere.15 Sequence analysis of all BAP1 exons was performed on genomic DNA from blood cells and tumour tissue. Oligonucleotide primers were designed to amplify all 17 BAP1 exons.16 PCR was performed on 20 ng genomic DNA using Green GoTaq DNA Polymerase (Promega, Madison, USA) in a total volume of 25 µL following the manufacturer's instructions. Annealing temperature for all primers was set to 62°C. Sanger sequencing was performed with routine methods using the PCR primers. BAP1 mutation (c.299T>C) refers to cDNA with accession number NM_004656.2.

Results

In 1997, the mother was diagnosed with UM of the ciliary body at the age of 56 years. Since 1991 a tumour of the chamber angle from the 6 o'clock to 10 o’clock position was controlled. After development of secondary glaucoma with intraocular pressure as high as 40 mm Hg, a biopsy of the tumour was performed and an UM with involvement of the ciliary body was diagnosed. Therefore the eye was enucleated. Histological analysis revealed an UM of mixed cellular structure which affected the ciliary body and iris (figure 1). An infiltration of the trabecular meshwork could be observed. There was no evidence for metastasis in 1998. Since then, the patient has not developed metastasis. In February 2012 an intrahepatic cholangiocellular carcinoma was diagnosed and treated by resection. In October, a relapse was treated by hemihepatectomy. Since then, no other neoplasms have developed and the patient is of good health now.

Figure 1

H&E staining of the ciliary body melanoma of the mother. (A) Mixed-cell malignant melanoma of the ciliary body and iris with infiltration of the trabecular meshwork (magnification 5×). (B) The tumour is composed of tightly-packed bundles of spindle-shaped cells (magnification 20×). (C) Slender nuclei and epitheloid cells (arrowhead) with abundant eosinophilic cytoplasm, large nuclei and prominent nucleoli as well as a few pigmented cells (arrow) are visible (magnification 40×). Access the article online to view this figure in colour.

The son was diagnosed with UM in 2007 at the age of 45 years. Initially, a tumour of the chamber angle was observed by slit lamp examination and gonioscopy (figure 2A,B). With dilated pupil and in retroillumination, a prominent intravitreal tumour mass was present (figure 2C,D). B-scan ultrasonography showed a mushroom shaped UM (figure 2E). A-scan ultrasonography revealed low reflectivity (figure 2F). The maximal prominence of the tumour was 6 mm to the sclera. The patient underwent proton radiation in November 2007, followed by a trans-scleral tumour resection in December 2007. In February 2008, May 2009 and July 2009, a recurring retinal detachment was finally successfully treated by silicone oil tamponade.

Figure 2

Clinical evaluation of the son before treatment. (A) Slit lamp examination: visible tumour in the chamber angle at 5.30 o'clock position. (B) Gonioscopy: tumour mass in the chamber angle. (C) Slit lamp examination with dilated pupil: tumour mass visible behind the lens. (D) Slit lamp examination in retroillumination: intravitreal tumour mass. (E) B-scan ultrasound: mushroom shaped melanoma of the choroid. (F) A-scan ultrasound: low reflectivity of tumour tissue. Access the article online to view this figure in colour.

In February 2010, an urothelial carcinoma was treated by operation and sixfold local chemotherapy. In February 2011 a recurrence of the ciliary body tumour was noted (figure 3) and the eye was enucleated in March 2011. Histological analysis revealed a nodular proliferating melanoma composed of pleomorphic eosinophilic cells with pleomorphic, eccentrically localised nuclei (figure 4). The patient was diagnosed with liver metastasis in segments 5, 7 and 8 in July 2011 and was treated by local radio frequency thermal ablation without obtaining a biopsy.

Figure 3

Slit lamp examination of the anterior segment: visible recurrence of the tumour in the chamber angle at the 9 o'clock position. Access the article online to view this figure in colour.

Figure 4

H&E staining of the melanoma of the ciliary body of the son. (A) Uveal melanoma with nodular growth pattern and infiltration of the ciliary body (5× magnification). (B) The uveal melanoma is composed of highly atypical melanocytes with abundant eosinophilic cytoplasm, eccentrically located, pleomorphic and hyperchromatic nuclei and prominent nucleoli (arrow). Some tumour cells are pigmented. A few multinucleated tumour cells (arrowhead) and atypical mitoses (20× magnification). Access the article online to view this figure in colour.

Mother and son did not smoke or were exposed to chemicals. Dermatological workup of the patients and family members did not reveal cutaneous melanoma or atypical cutaneous naevi.

Genotyping of the tumour DNAs of the mother and son by microsatellite analysis using eight chromosome 3 markers15 revealed loss of heterozygosity of all informative markers, consistent with monosomy 3. Sequence analysis of all 17 exons of the BAP1 gene in DNA from the son's tumour revealed a missense mutation (c.299T>C) in exon 5. The same mutation was detected at heterozygous state in the blood DNAs from the son and the mother (figure 5) by Sanger sequencing. Other family members did not undergo BAP1 sequencing.

Figure 5

Sanger sequencing of BAP1 exon 5 demonstrating a heterozygous mutation (c.299 T>C, indicated by arrows) in blood DNA from the affected patients (mother and son). The tumour of the son shows loss of the normal allele. The electropherogram shows a heterozygous T>C substitution that replaces Leucine by Proline at codon 100. Access the article online to view this figure in colour.

There was no history of UM, breast or ovarian cancer in any other family member, but the pedigree revealed several other neoplasias (figure 6).

Figure 6

Pedigree of the family with inherited uveal melanoma. Only the patients affected by uveal melanoma (I.2, II.2) were examined at the Department of Ophthalmology, University of Regensburg.

Discussion

Several lines of evidence strongly suggest that BAP1 plays a major role in tumour development. Harbour et al12 found inactivating somatic mutations in 26 of 31 (84%) metastasising tumours and usually BAP1 mutations are seen on the remaining allele in tumours with monosomy 3. As the two-step mutational inactivation of this gene complies with the classical tumour suppressor gene model, it is plausible that inactivating BAP1 germline mutations can be a cause of inherited predisposition to this cancer. Familial UM is reported to be a rare condition comprising only ∼0.6–6% of all patients with UM.2 ,3

In the present study, we report on a BAP1 germline mutation associated with familial UM. In the tumour of the son, monosomy 3 was observed with the mutated BAP1 allele retained suggesting complete inactivation of BAP1. This is in concordance with an assumed tumour suppressor gene function of BAP1. The missense mutation found in exon 5 of the BAP1 gene causes replacement of Leucine with Proline at codon 100 (L100P). We used Sorting Intolerant From Tolerant (SIFT) and Polyhen-2 to predict whether the amino acid substitution affects BAP1 protein function.17 ,18 According to both algorithms, the change in amino acid sequence of BAP1 as found in the affected patients is classified as damaging, with a PolyPhen-2 probability score of 1.

Although both patients carry the same germline mutation, the course of disease is different. Age at diagnosis of the primary UM was 56 years for the mother and thereafter no other neoplasia was diagnosed. With 45 years of age, the son was much younger when diagnosed with UM. Shortly after, he has been diagnosed with a second tumour and metastatic UM suggesting a more severe course of disease. Previously BAP1 germline mutations have been reported to cosegregate with other tumours such as mesothelioma or melanocytic tumours in other families.12 ,13

The results of our study provide further evidence that BAP1 germline mutations predispose to tumours including UM. However, the predominant type of tumour varies between different families thus the tumour entity might depend on additional factors. More families with BAP1 germline mutation have to be identified and investigated to determine these factors.

References

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Footnotes

  • Contributors The study was conducted by HJ and DAM. MZ, JN and DRL contributed by genetical analyses. AKB and RK contributed by pathological workup.

  • Competing interests None.

  • Ethics approval

  • Provenance and peer review Not commissioned; externally peer reviewed.

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