PCR primers, reagent concentrations, and thermal cycling conditions used
Primer (source) | Primer sequence | Expected fragment size | PCR reagent formulation* | Thermal cycling profile |
---|---|---|---|---|
*Reagent was from Platinum Taq DNA Polymerase (Invitrogen). | ||||
Sars1S/As (Germany) | Sars1S | 121 bp | 5 μl 10X PCR buffer 1.5 mM MgCl2 250 mM of each dNTP 20 μM each primer 2 units of Taq polymerase 2 μl of cDNA 50 μl total volume | Hold: 95°C/3 min |
10 cycles: | ||||
5′-cctctcttgttcttgctcgca-3′ | 95°C/10 s | |||
58°C/10 s | ||||
Sar1AS | 72°C/20 s | |||
5′-tatagtgagccgccacacatg-3′ | 40 cycles: | |||
95oC/10 s | ||||
56°C/10 s | ||||
72°C/20 s | ||||
Hold: 72°C/5 min | ||||
Cor1/2 (Hong Kong) | Cor1 | 310 bp | Hold: 94°C/2 min | |
10 cycles: | ||||
94°C/30 s | ||||
5′-caccgtttctacaggttagctaacga-3′ | 56°C/60 s | |||
Cor2 | 70°C/45 s | |||
5′-aaatgtttacgcacggtaagcgtaaaa-3′ | 35 cycles: | |||
94°C/30 s | ||||
60°C/45 s | ||||
70°C/45 s | ||||
Hold: 72°C/5 min |