SNPs, MAF and test for HWE and corresponding reported MAF in the 1000 genomes project in South Asian and European populations
| Chromosome | Gene | SNP | Major/minor alleles | HWE* | MAF† | MAF EUR‡ | MAF SAS§ |
| 1 | Y402H | rs1061170 | T/C | 0.6854 | 0.323 | 0.362 | 0.287 |
| 4 | TLR3 | rs3775291 | C/T | 0.9347 | 0.235 | 0.324 | 0.263 |
| 6 | C2 | rs547154 | C/A | 0.3813 | 0.187 | 0.089 | 0.156 |
| 6 | SKIV2L | rs438999 | A/G | 0.6932 | 0.183 | 0.089 | 0.148 |
| 6 | LOC107986598¶ | rs4711751 | T/C | 1 | 0.423 | 0.487 | 0.330 |
| 6 | FRK | rs1999930 | C/T | 0.3957 | 0.075 | 0.281 | 0.052 |
| 9 | ABCA1 | rs1883025 | C/T | 0.0797 | 0.432 | 0.240 | 0.413 |
| 10 | ARMS2 | rs10490923 | G/A | 0.7299 | 0.149 | 0.130 | 0.148 |
| 10 | ARMS2 | rs10490924 | G/T | 0.1953 | 0.319 | 0.195 | 0.343 |
| 10 | HTRA1 | rs2672598 | T/C** | 0.2969 | 0.524 | 0.499 | 0.464 |
| 15 | LIPC | rs10468017 | C/T | 0.9195 | 0.176 | 0.283 | 0.184 |
| 16 | CETP | rs3764261 | C/A | 0.0737 | 0.295 | 0.292 | 0.321 |
| 19 | APOE | rs429358 | T/C | 1 | 0.097 | 0.155 | 0.087 |
| 19 | APOE | rs7412 | C/T | 0.5232 | 0.050 | 0.063 | 0.044 |
| 19 | CFD | rs3826945 | T/C | 0.8424 | 0.344 | 0.313 | 0.334 |
*P value for tests for departure from Hardy-Weinberg equilibrium (HWE) in controls.
†Minor allele frequency (MAF) in controls.
‡MAF from 1000 genome study for European ancestry available at https://www.ncbi.nlm.nih.gov/snp.
§MAF from 1000 genome study for South Asian ancestry available at https://www.ncbi.nlm.nih.gov/snp.
¶SNP located near VEGFA.
**Minor allele considered as C for comparison with other studies.
SNP, single nucleotide polymorphisms.